Black spots don't seem like any common diseases.
My guess is that they are just some post-mortem reaction. A bit like rigor mortis.
Check ammonia levels. That is the most common cause of mass-death in QT.
Cowfish and Cucumber poisonings seem similar.
There is concern about some species. But it seems really rare in aquarium ones.
But not a lot of clear scientific evidence either way.
You will likely never know.