So my Rev-1 test had lots of problems with air flow restrictions. Skimmer kept stopping with an error.
My Rev-2 plan, sort-of in progress:
Use TWO canisters, in parallel.
Have a short tube to the skimmer intake, and TEE off that quickly to the dual canisters.
For that TEE, connect to the OUTSIDE of the skimmer tube, not a barb fitting inside. A pain, but those barb fittings have a tiny ID.
Then build a cap that loosely fits over the skimmer top. With two tubes coming out going to the canisters.
Because the cap is on top vertically, it cannot possibly fill with water, since water would plug skimmer holes.
Plus I would put the canisters above the skimmer anyway.
I am not really sure that cup idea you have does more than delay the problem.
When skimmer goes nuts, seems like that would fill up quickly as well.
A possible but risky test: Add a small dose of Chemiclean, see what happens.